PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G314600.1
Common NameB456_009G314600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 975aa    MW: 105922 Da    PI: 5.308
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G314600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07549589547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         T eE e+++d  + +G++ +++Ia+ +  ++t  +c+++++k 
  Gorai.009G314600.1 549 TSEEKEIFIDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYKN 589
                         89**************99.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-10532592IPR009057Homeodomain-like
PROSITE profilePS5129312.579543594IPR017884SANT domain
SMARTSM007172.1E-5544592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-4549591IPR009057Homeodomain-like
PROSITE profilePS512938.491747798IPR017884SANT domain
SMARTSM007170.095748796IPR001005SANT/Myb domain
SuperFamilySSF466894.16E-7749798IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MVSVDDMLFL HFLYSDFVNT SEQLQKDLHD NKTSGVNGLG TGQRCERGNS VGSINWKPLK  60
WSCSRSLSSW GSGFSHSSSS KSLGAACVIS AAPSGETTPR KKPCLGWGQG LAKYEKKKVE  120
CPDKSMNRVE ATTSAGSTES SNSMSSNLAD KSPRVLGFSD CSSSATPSSV DCGSSPGVED  180
KSFFQAANFD NDISNLCSSP SLRSQNHPGG SAFSFEKLDT NSVIHLGSSL IDLLQSDDPS  240
TVILCQLPAT SSSLPDEENG KTCEEQKIVS VMVVMGILMV VSKFVEPLSL EKVVSASDNL  300
DTSQLTTMDE VVLVTASSNE GSCTPISAEG SMVKKIDDNA HVPGSLNYDA GRENIVYVEI  360
LTPYKELENG ACKVFNNRLP KDRYRNEISE IHNAASCQTD SSIRKRIAMQ KQYLRFKERS  420
LSLKFKAFHH AWNEDMRLLS VRKRHAKSQK KYEFSLCSTD GGYQKHCSSI LSHSLLAQYL  480
ILEPRTVMIN IASKLLLDSN GRLYRIALKM PGLVLDEKEK QVSRFISSNG LVEDPCAAEK  540
ERALINPSTS EEKEIFIDKL AAFGKDFRKI ASFLDHKTTA DCVEFYYKNL KSECFERKKK  600
LDLSKQGKSF MNTYLLTSRK KWSRDFNAAS LDVLGAASVI TAHAENAMQN QKTSSGRIFI  660
ESHCNSRTSQ FDDSIAKRSS SSEIIWKDEV AVAADVLAGI CGSLSSKAMS SCIIGSADPG  720
ESLPLPSTSD ATLNIDDTCS DNSCWEMDPA DWLDEEKSVF IQAVLSYGKD FGMISQSVGT  780
SSRDQCKVFF SKAHKCLGLD LIHPRTGSIG TPKSDDAIGD GSDTGDACVL ESSVVCSKKL  840
VSKMEDLPSS IVSMDFDESD INREVSLQTD LNLSDEKNGR LIDHRDSEAV EAMVSDVGQT  900
EPISEGVGDD IVVDGSKAES VYVHRTAALA NLNAVRNHVA EQGPGVSIAV SGALGEAVDP  960
CVSRVDTVLE PKSDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5788051e-60JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009786.10.0Duplicated homeodomain-like superfamily protein isoform 2
TrEMBLA0A0D2SBN00.0A0A0D2SBN0_G
STRINGVIT_13s0019g04010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52602744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.17e-97MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]